About submitting the common app

I’m applying ED, So I finished everything in common app except my counselor submitting my school report and fee waiver. She said she couldn’t do this if I have not submitted the common app.But once I submit, I think the application information couldn’t be changed anymore according to what common app website said.How she can submit my school report after I submit my common app???I felt so confused about that issue.I already sent the request to my counselor through common app for two weeks.She insists that I should submit my common app so that she could start to submit my report and fee waiver.What am I supposed to do?The deadline is coming and I have no idea about what to do.Can someone help me?