@HeyItsNick: Admission by examination is very rare so I would not get my hopes up on using this to fulfill your a-g course requirements. I believe you need to contact each school of interest to see if it is at all possible.
All grades 9-11th need to be filled out in the UC/CSU application.
PE classes do not count and you need to have 1 year of a visual/performing Art requirement also.
CSU’s only use CSU/UC GPA and your SAT Math+CR or ACT composite scores for determining admissions. They calculate your eligiblility index: (CSU GPA x800) + (SAT Math+CR) or (CSU GPA x200) + (ACT composite x10)
What are your SAT/ACT scores? Each CSU (except SLO) will rank applicants for each major based on the EI and admit from highest to all spots are filled.
SJSU publishes their EI thresholds for each major every year. Here is the link to see how you measure up:
http://info.sjsu.edu/web-dbgen/narr/admission/rec-10079.12651.html
Other than UCM, probably most of the UC’s are out of reach. EC’s and essays do contribute to your overall application so there is always a chance. Your best chances would be at the many CSU’s as noted by @NCalRent in above post and they are excellent schools for the value.