<p>I would email the school or the CA (<a href="mailto:appsupport@commonapp.net">appsupport@commonapp.net</a>) to see how you could resolve the problem. Try the CA first. They usually respond very quickly.</p>
<p>EDIT: I found a similar question on their Support Center.
Since you could add courses under the Academics section in the online CA, I would not worry about the PDF. If you’re still concerned, I would make a mention of the problem under the additional information box.</p>