Confused about application/transfer process, help?

I’m pretty confused, just got done submitting my transfer application for my backup school, and they didn’t have an option to submit my official college transcript? I ended up submitting my transcript through my school’s website but I just assumed it would all be done at once.

So they are actually two different processes? So if I wanted to, I could submit my application to FSU (target school), fill out all the personal information, submit it, and then hold on to submitting my transcript, until my final grades come in? Doing this because my gpa will be much, much higher after this semester. I just want the best chance to get in, someone please provide some incite.