High Schools Using Naviance

So basically my high school uses Naviance to connect letters of recommendation to Common App. I am a little bit concerned because on naviance, for two of my teachers, the status says “In Progress” instead of “Submitted” but when I talked to my counselor, he said it was fine and does not know why it shows up like that for me. I think because of that, on my Common App, it shows a yellow dot next to my teacher recs section.
I already submitted an application to Brown yesterday and when I logged in to my portal today, it has a red X next to basically everything that my teachers/counselors submit like counselor recs, school report, teacher recs, etc. My counselor said he sent all of that in for me on Friday.
So yeah there’s my whole rant. Does Naviance usually glitch like that? And should I wait a while with Brown’s portal before freaking out? The deadline is coming up fast ;(