Only considering 2 highest SAT II's?

Some colleges I applied to state that they only consider the 2 highest. I self-reported 3 and sent in scores for all 3 tests I took. As my 2 highest are both in science subjects, I was wondering if they’d consider the 3rd at all, which is entirely in a different subject area. I just didn’t want to seem too narrow (?) if that makes any sense.