In general, top colleges want the strongest class they can build. That includes academics, experiences you pursued, and personal traits. Issues in any of those can affect your shot. As tecno13 said so many high stats kids, with no stumbles.
OP, are those weighted gpa numbers? Top colleges will look at the transcript. In real life, overcoming is commendable. But the competition for a tippy top is nuts. Try to know what does matter.