<p>I'm wondering what the best course selection would be to pursue a masters in alternative energy. I'm leaning toward chemical engineering with some emphasis on electrical systems. I mainly want to work in the biofuel and hydrogen industries.</p>
<p>Biofuels/hydrogen technology is primarily (bio)chemical engineering.</p>
<p>You should also give a look into Materials, since a lot of the research there overlaps between ChemE and MSE.</p>