Didn’t do so well my sophomore year but very well my junior year 3.56 unweighted 3.88 weighted! will SJSU acknowledge my junior year at all? or will they only look at my CSU GPA which is a 3.46 (again I had a bad sophomore year) please any help will be good 
SJSU will look at all grades from 9-11th reported on your application even though your CSU GPA is based on your 10-11th grades. They will note your upward grade trend and also check that you are fulfilling the a-g course requirements by checking your senior schedule which you also self report (without grades of course).