Had a rough Junior year, and am an athlete, Chances?

Hi I am a Junior who is about to be a senior and final grades have came out. Here are my grades:
Junior comp and lit - 88

Honors french - 85

physics- 75

alg 2 trig -76

us history- 81
american foods-94
international foods -96
Regents US history:98
Regents alg 2 trig: 65
Regents English:91
SAT: its in the 1500s

Now I would have been fine with my grades except we had a final in physics which was factored into the final grade, and i failed that terribly and it brought my final course grade down to what should of been an 83 to a 75. I now have 2 grades in the 70’s which has never happened to me before. Despite this my gpa is still a 85.12 which is a 3.0 but it is only because of my cooking classes which counts as 2 final grades. my sophomore and freshman year where good where i had a like an 86 avg my freshman year than an 85 avg my sophomore year. How is this going to look to colleges? Im looking at schools like stony brook, northeastern, Albany, Binghamton and some other NY schools. SB, and NE i am in the process of getting recruited for a sport (not gonna say which), but they still need to do pre-reads/admissibility review at the admission offices. I feel like I am in a really bad situation and not quite sure of my chances, to get into these schools. I did good on these regents test, not math lol, but do they really matter, do they weigh in? Will these two 70’s mess me up? i plan on taking 2 AP classes, come senior year. Thanks in advance for the insight.